Research workbench
Bromodomain of PF3D7_1475600 from plasmodium falciparum complexed with peptide H4K5AC
Analyse Bromodomain of PF3D7_1475600 from plasmodium falciparum complexed with peptide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VS7
- Type
- protein
- Length
- 124 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bromodomain protein, putative; H4K5AC peptide
- UniProt
- Q8IK82
- Ligands
- CL
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bromodomain protein, putative | protein | 119 | 70% helix, 0% strand | Q8IK82 |
| P | H4K5AC peptide | protein | 5 | 0% helix, 0% strand | — |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–P · 335 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (acetylation).
Compared structures
- 5VS7 · Bromodomain of PF3D7_1475600 from Plasmodium falciparum complexed with peptide H4K5ac · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IK82
- Elsewhere: RCSB PDB 5VS7 · PDBe 5VS7 · UniProt Q8IK82
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