Research workbench
Crystal structure of grouper iridovirus GIV66:BIM complex
Analyse Crystal structure of grouper iridovirus GIV66:BIM complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VMO
- Type
- protein
- Length
- 139 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bak protein; BCL-2 interacting mediator of cell death
- UniProt
- Q5GAF0, B2KKY9
Structure
x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bak protein | protein | 115 | 75% helix, 0% strand | Q5GAF0 |
| B | BCL-2 interacting mediator of cell death | protein | 24 | 83% helix, 0% strand | B2KKY9 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 896 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5VMO · Crystal structure of grouper iridovirus GIV66:Bim complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5GAF0
- Every structure of UniProt B2KKY9
- Elsewhere: RCSB PDB 5VMO · PDBe 5VMO · UniProt Q5GAF0 · UniProt B2KKY9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.