Research workbench
Solution NMR structure of the membrane electron transporter ccda
Analyse Solution NMR structure of the membrane electron transporter ccda in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VKV
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C-type biogenesis protein ccda
- UniProt
- Q5SIG0
- Pockets
- 2 · best druggability 0.86
Structure
solution nmr · 1 distinct chain · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C-type biogenesis protein ccda | protein | 224 | 71% helix, 0% strand | Q5SIG0 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 993 | 0.86 | 0.86 | 97 | empty |
| 2 | 103 | 0.42 | 0.77 | 13 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5VKV · Solution NMR structure of the membrane electron transporter CcdA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SIG0
- Elsewhere: RCSB PDB 5VKV · PDBe 5VKV · UniProt Q5SIG0
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