Research workbench
Crystal structure of a putative surface protein encoded by BTA121
Analyse Crystal structure of a putative surface protein encoded by BTA121 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VJ4
- Type
- protein
- Length
- 548 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A0A0R9P931
- Ligands
- SO4
- Pockets
- 7 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 275 | 79% helix, 0% strand | A0A0R9P931 |
| B | Uncharacterized protein | protein | 273 | 80% helix, 0% strand | A0A0R9P931 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 13 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.85 | 0.97 | 32 | SO4 |
| 2 | 278 | 0.69 | 0.84 | 34 | SO4 |
| 3 | 242 | 0.67 | 0.84 | 28 | SO4 |
| 4 | 83 | 0.66 | 0.91 | 22 | empty |
| 5 | 247 | 0.56 | 0.78 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 1359 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 5VJ4 · Crystal structure of a putative surface protein encoded by BTA121 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0R9P931
- Elsewhere: RCSB PDB 5VJ4 · PDBe 5VJ4 · UniProt A0A0R9P931
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