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Crystal structure of pentad mutant gapr-1

Analyse Crystal structure of pentad mutant gapr-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5VHG
Type: protein
Length: 150 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Golgi-associated plant pathogenesis-related protein 1
UniProt: Q9H4G4
Ligands: SO4
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Golgi-associated plant pathogenesis-related protein 1	protein	150	45% helix, 17% strand	Q9H4G4

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	66	0.34	0.77	15	empty

Compared structures

5VHG · Crystal structure of pentad mutant GAPR-1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9H4G4 · AlphaFold monomer V2.0 prediction for golgi-associated plant pathogenesis-related protein… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9H4G4
Elsewhere: RCSB PDB 5VHG · PDBe 5VHG · UniProt Q9H4G4

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