Research workbench
Crystal structure of rabbit muscle glycogenin
Analyse Crystal structure of rabbit muscle glycogenin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LL0
- Type
- protein
- Length
- 2,614 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycogenin-1
- EC
- 2.4.1.186
- UniProt
- P13280
- Pockets
- 20 · best druggability 0.71
Structure
x-ray diffraction · 9 distinct chains · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycogenin-1 (EC 2.4.1.186) | protein | 264 | 45% helix, 18% strand | P13280 |
| B | Glycogenin-1 (EC 2.4.1.186) | protein | 267 | 45% helix, 16% strand | P13280 |
| C | Glycogenin-1 (EC 2.4.1.186) | protein | 262 | 45% helix, 17% strand | P13280 |
| D, F | Glycogenin-1 (EC 2.4.1.186) | protein | 261 | 45% helix, 18% strand | P13280 |
| E | Glycogenin-1 (EC 2.4.1.186) | protein | 262 | 45% helix, 16% strand | P13280 |
| G | Glycogenin-1 (EC 2.4.1.186) | protein | 262 | 45% helix, 17% strand | P13280 |
| H | Glycogenin-1 (EC 2.4.1.186) | protein | 260 | 44% helix, 17% strand | P13280 |
| I | Glycogenin-1 (EC 2.4.1.186) | protein | 264 | 44% helix, 17% strand | P13280 |
| J | Glycogenin-1 (EC 2.4.1.186) | protein | 251 | 44% helix, 18% strand | P13280 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.71 | 0.76 | 96 | empty |
| 2 | 734 | 0.68 | 0.76 | 79 | empty |
| 3 | 640 | 0.67 | 0.76 | 68 | empty |
| 4 | 607 | 0.66 | 0.76 | 57 | empty |
| 5 | 563 | 0.65 | 0.76 | 49 | empty |
Interfaces
13 interfaces between chains.
- E–F · 1236 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 1228 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 1228 Ų buried · 9 hydrogen bonds · protein-protein
- G–H · 1219 Ų buried · 9 hydrogen bonds · protein-protein
- I–J · 1194 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13280
- Elsewhere: RCSB PDB 1LL0 · PDBe 1LL0 · UniProt P13280
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