Research workbench
Crystal structure of EVP30 C-terminus and enp peptide
Analyse Crystal structure of EVP30 C-terminus and enp peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VAP
- Type
- protein
- Length
- 246 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Minor nucleoprotein VP30; Np
- UniProt
- Q77DJ5, A0A0D5W865
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 4 distinct chains · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Minor nucleoprotein VP30 | protein | 111 | 73% helix, 0% strand | Q77DJ5 |
| D | Np | protein | 12 | 0% helix, 0% strand | A0A0D5W865 |
| B | Minor nucleoprotein VP30 | protein | 112 | 72% helix, 0% strand | Q77DJ5 |
| C | Np | protein | 11 | 0% helix, 0% strand | A0A0D5W865 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 271 | 0.68 | 0.84 | 37 | empty |
Interfaces
4 interfaces between chains.
- B–C · 644 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 631 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 464 Ų buried · 6 hydrogen bonds · protein-protein
- D–B · 60 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5VAP · Crystal structure of eVP30 C-terminus and eNP peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77DJ5
- Every structure of UniProt A0A0D5W865
- Elsewhere: RCSB PDB 5VAP · PDBe 5VAP · UniProt Q77DJ5 · UniProt A0A0D5W865
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