Research workbench
Crystal structure of accessory secretion protein 1
Analyse Crystal structure of accessory secretion protein 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VAF
- Type
- protein
- Length
- 2,052 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Accessory sec system protein ASP1
- UniProt
- Q9AET9
- Pockets
- 20 · best druggability 0.73
Structure
x-ray diffraction · 4 distinct chains · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Accessory sec system protein ASP1 | protein | 510 | 34% helix, 25% strand | Q9AET9 |
| B | Accessory sec system protein ASP1 | protein | 515 | 33% helix, 24% strand | Q9AET9 |
| C | Accessory sec system protein ASP1 | protein | 516 | 33% helix, 24% strand | Q9AET9 |
| D | Accessory sec system protein ASP1 | protein | 511 | 34% helix, 24% strand | Q9AET9 |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.73 | 0.88 | 28 | empty |
| 2 | 660 | 0.72 | 0.79 | 63 | empty |
| 3 | 304 | 0.71 | 0.85 | 45 | empty |
| 4 | 533 | 0.68 | 0.79 | 42 | empty |
| 5 | 533 | 0.68 | 0.79 | 45 | empty |
Interfaces
2 interfaces between chains.
- C–D · 275 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 219 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AET9
- Elsewhere: RCSB PDB 5VAF · PDBe 5VAF · UniProt Q9AET9
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