Research workbench
Crystal structure of ATXR5 phd domain in complex with histone H3
Analyse Crystal structure of ATXR5 phd domain in complex with histone H3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VAB
- Type
- protein
- Length
- 65 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATXR5 phd domain; Histone H3 peptide
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATXR5 phd domain | protein | 54 | 6% helix, 15% strand | — |
| F | Histone H3 peptide | protein | 11 | 0% helix, 27% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–F · 607 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5VAB · Crystal structure of ATXR5 PHD domain in complex with histone H3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5VAB · PDBe 5VAB
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