Research workbench

Trim-cyclophilin a B-box 2 and coiled-coil chimera

Analyse Trim-cyclophilin a B-box 2 and coiled-coil chimera in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5VA4
Type: protein
Length: 123 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRIM5/CYCLOPHILIN a V4 fusion protein
EC: 6.1.1.11
UniProt: Q68KK2, P34945
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 69% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRIM5/CYCLOPHILIN a V4 fusion protein (EC 6.1.1.11)	protein	123	69% helix, 8% strand	Q68KK2, P34945

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VA4 · TRIM-Cyclophilin A B-box 2 and coiled-coil chimera · the same entry in another collection · chain A against A, TM-score 1.00
P34945 · AlphaFold monomer V2.0 prediction for serine--tRNA ligase (P34945) · a predicted model of the same protein · chain A against A, TM-score 0.43

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q68KK2
Every structure of UniProt P34945
Elsewhere: RCSB PDB 5VA4 · PDBe 5VA4 · UniProt Q68KK2 · UniProt P34945

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