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Structure of haliangium ochraceum bmc-T ho-3341

Analyse Structure of haliangium ochraceum bmc-T ho-3341 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5V76
Type: protein
Length: 412 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Microcompartments protein
UniProt: D0LV02
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Microcompartments protein	protein	206	40% helix, 30% strand	D0LV02

Ligands and binding sites

GOL · Glycerol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.53	0.88	18	empty

Interfaces

1 interface between chains.

A–B · 1000 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

5V76 · Structure of Haliangium ochraceum BMC-T HO-3341 · the same entry in another collection · chain A against A, TM-score 1.00
D0LV02 · AlphaFold monomer V2.0 prediction for bacterial microcompartment protein trimer-3 (D0LV02) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0LV02
Elsewhere: RCSB PDB 5V76 · PDBe 5V76 · UniProt D0LV02

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