Research workbench
Crystal structure of the sensor domain of the transcriptional regulator hcpr from porphyromonas gingivalis
Analyse Crystal structure of the sensor domain of the transcriptional regulator hcpr… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5V30
- Type
- protein
- Length
- 304 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulator
- UniProt
- A0A134DM59
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Transcriptional regulator | protein | 152 | 40% helix, 28% strand | A0A134DM59 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.65 | 0.83 | 27 | GOL |
| 2 | 201 | 0.61 | 0.82 | 30 | GOL |
Interfaces
1 interface between chains.
- A–B · 2061 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5V30 · Crystal structure of the sensor domain of the transcriptional regulator HcpR from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A134DM59
- Elsewhere: RCSB PDB 5V30 · PDBe 5V30 · UniProt A0A134DM59
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