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Crystal structure of ice binding protein from an antarctic bacterium flavobacteriaceae

Analyse Crystal structure of ice binding protein from an antarctic bacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5UYT
Type: protein
Length: 847 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ice-binding protein
UniProt: B3GGB1
Ligands: NO3
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 14% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ice-binding protein	protein	423	14% helix, 42% strand	B3GGB1
B	Ice-binding protein	protein	424	14% helix, 43% strand	B3GGB1

Ligands and binding sites

NO3 · Nitrate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	165	0.51	0.79	35	empty
2	173	0.49	0.77	35	empty
3	99	0.35	0.74	25	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5UYT · Crystal structure of ice binding protein from an Antarctic bacterium Flavobacteriaceae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3GGB1
Elsewhere: RCSB PDB 5UYT · PDBe 5UYT · UniProt B3GGB1

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