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Yfea from yersinia pestis treated with edta during purification and crystallization

Analyse Yfea from yersinia pestis treated with edta during purification and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5UXU
Type: protein
Length: 275 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic chelated iron-binding protein yfea
UniProt: Q56952
Ligands: ZN
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic chelated iron-binding protein yfea	protein	275	45% helix, 13% strand	Q56952

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.25	0.73	15	empty

Compared structures

5UXU · YfeA from Yersinia pestis treated with EDTA during purification and crystallization · the same entry in another collection · chain A against A, TM-score 1.00
Q56952 · AlphaFold monomer V2.0 prediction for periplasmic chelated iron- binding protein yfea… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56952
Elsewhere: RCSB PDB 5UXU · PDBe 5UXU · UniProt Q56952

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