Research workbench
RNA hairpin structure containing 2-meimpg monomer analogue and 2- meimp-oligomer analogue
Analyse RNA hairpin structure containing 2-meimpg monomer analogue and 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UX3
- Type
- RNA
- Length
- 32 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (25-mer); RNA (5'-D(*(RG))-R(P*CP*AP*CP*CP*UP*CP*A)-3')
- Ligands
- 8OS
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (25-mer) | rna | 25 | — | — |
| B | RNA (5'-D(*(RG))-R(P*CP*AP*CP*CP*UP*CP*A)-3') | rna | 7 | — | — |
Ligands and binding sites
- 8OS · 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl) phosphoryl]guanosine · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 325 Ų buried · 29 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 3 modified, 1 covalent (nucleotide modification, covalent ligand).
Compared structures
- 5UX3 · RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5UX3 · PDBe 5UX3
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