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Structure of E. COLI mce protein mlad, core mce domain

Analyse Structure of E. COLI mce protein mlad, core mce domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5UW8
Type: protein
Length: 721 residues
Chains: 7
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable phospholipid ABC transporter-binding protein mlad
UniProt: P64605
Pockets: 6 · best druggability 0.33

Structure

x-ray diffraction · 6 distinct chains · 0% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable phospholipid ABC transporter-binding protein mlad	protein	105	0% helix, 47% strand	P64605
B	Probable phospholipid ABC transporter-binding protein mlad	protein	98	0% helix, 52% strand	P64605
C	Probable phospholipid ABC transporter-binding protein mlad	protein	101	0% helix, 50% strand	P64605
D	Probable phospholipid ABC transporter-binding protein mlad	protein	102	0% helix, 48% strand	P64605
E, G	Probable phospholipid ABC transporter-binding protein mlad	protein	106	0% helix, 48% strand	P64605
F	Probable phospholipid ABC transporter-binding protein mlad	protein	103	0% helix, 50% strand	P64605

Pockets

6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.33	0.73	17	empty
2	79	0.31	0.74	14	empty
3	62	0.31	0.75	17	empty
4	64	0.30	0.75	17	empty
5	71	0.28	0.72	15	empty

Interfaces

7 interfaces between chains.

E–F · 475 Å² buried · 2 hydrogen bonds · protein-protein
D–E · 451 Å² buried · 3 hydrogen bonds · protein-protein
A–B · 442 Å² buried · 2 hydrogen bonds · protein-protein
A–G · 422 Å² buried · 3 hydrogen bonds · protein-protein
F–G · 407 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

5UW8 · Structure of E. coli MCE protein MlaD, core MCE domain · the same entry in another collection · chain G against G, TM-score 1.00
P64605 · AlphaFold monomer V2.0 prediction for intermembrane phospholipid transport system binding… · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P64605
Elsewhere: RCSB PDB 5UW8 · PDBe 5UW8 · UniProt P64605

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