Research workbench
PLX2A, an ADP-ribosyltransferase toxin from paenibacillus larvae
Analyse PLX2A, an ADP-ribosyltransferase toxin from paenibacillus larvae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5URP
- Type
- protein
- Length
- 201 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Toxin 2A
- UniProt
- M9V3B7
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Toxin 2A | protein | 201 | 37% helix, 26% strand | M9V3B7 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 207 | 0.53 | 0.78 | 26 | GOL |
| 2 | 83 | 0.33 | 0.74 | 11 | empty |
Compared structures
- 5URP · Plx2a, an ADP-ribosyltransferase toxin from Paenibacillus larvae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M9V3B7
- Elsewhere: RCSB PDB 5URP · PDBe 5URP · UniProt M9V3B7
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