Research workbench
Structure of a soluble epoxide hydrolase identified in trichoderma reesei
Analyse Structure of a soluble epoxide hydrolase identified in trichoderma reesei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5URO
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted protein
- UniProt
- G0R7E2
- Ligands
- 8LD
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted protein | protein | 336 | 41% helix, 17% strand | G0R7E2 |
Ligands and binding sites
- 8LD · 2,2'-oxydi(ethyn-1-ol) · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 384 | 0.71 | 0.83 | 30 | empty |
| 2 | 127 | 0.55 | 0.82 | 25 | empty |
Compared structures
- 5URO · Structure of a soluble epoxide hydrolase identified in Trichoderma reesei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0R7E2
- Elsewhere: RCSB PDB 5URO · PDBe 5URO · UniProt G0R7E2
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