Research workbench
Crystal structure of 6-phosphogluconate dehydrogenase with ((4R,5R)-5- (hydroxycarbamoyl)-2,2-dimethyl-1,3-dioxolan-4-YL)METHYL dihydrogen phosphate
Analyse Crystal structure of 6-phosphogluconate dehydrogenase with ((4R,5R)-5… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UQ9
- Type
- protein
- Length
- 3,746 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P52209
- Ligands
- 8HS
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D, F | — | protein | 469 | — | P52209 |
| B | — | protein | 470 | — | P52209 |
| E | — | protein | 468 | — | P52209 |
| G, H | — | protein | 466 | — | P52209 |
Ligands and binding sites
- 8HS · [(4R,5R)-5-(hydroxycarbamoyl)-2,2-dimethyl-1,3-dioxolan-4-yl]methyl dihydrogen phosphate · ligand · chains E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UQ9 · Crystal structure of 6-phosphogluconate dehydrogenase with… · the same entry in another collection · chain H against H, TM-score 1.00
- P52209 · AlphaFold monomer V2.0 prediction for 6-phosphogluconate dehydrogenase, decarboxylating… · a predicted model of the same protein · chain E against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52209
- Elsewhere: RCSB PDB 5UQ9 · PDBe 5UQ9 · UniProt P52209
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