Research workbench
Crystal structure of TNMS3 in complex with riboflavin
Analyse Crystal structure of TNMS3 in complex with riboflavin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UMX
- Type
- protein
- Length
- 242 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYOXALASE/BLEOMYCIN resisance PROTEIN/DIOXYGENASE
- UniProt
- A0A125SA29
- Ligands
- RBF
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | GLYOXALASE/BLEOMYCIN resisance PROTEIN/DIOXYGENASE | protein | 121 | 17% helix, 41% strand | A0A125SA29 |
Ligands and binding sites
- RBF · Riboflavin · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 283 | 0.57 | 0.77 | 27 | RBF |
| 2 | 257 | 0.55 | 0.77 | 31 | RBF |
Interfaces
1 interface between chains.
- A–B · 1886 Ų buried · 39 hydrogen bonds · protein-protein
Compared structures
- 5UMX · Crystal structure of TnmS3 in complex with riboflavin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A125SA29
- Elsewhere: RCSB PDB 5UMX · PDBe 5UMX · UniProt A0A125SA29
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.