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Crystal structure of sugar ABC transporter from yersinia enterocolitica subsp. enterocolitica 8081

Analyse Crystal structure of sugar ABC transporter from yersinia enterocolitica subsp.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ULB
Type: protein
Length: 333 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative sugar ABC transporter
UniProt: A0A0T9SS21
Ligands: 8GA, 8GG
Pockets: 3 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative sugar ABC transporter	protein	333	44% helix, 19% strand	A0A0T9SS21

Ligands and binding sites

8GA · 5-Se-methyl-5-seleno-alpha-D-ribofuranose · ligand · chains A
8GG · 5-Se-methyl-5-seleno-beta-D-ribofuranose · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.72	0.98	19	8GA, 8GG
2	62	0.34	0.77	12	empty
3	56	0.33	0.77	18	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

5ULB · Crystal structure of sugar ABC transporter from Yersinia enterocolitica subsp.… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt A0A0T9SS21
Elsewhere: RCSB PDB 5ULB · PDBe 5ULB · UniProt A0A0T9SS21

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