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Structure of unliganded anti-GP120 CD4BS antibody DH522.2 Fab in complex with a GP120 core

Analyse Structure of unliganded anti-GP120 CD4BS antibody DH522.2 Fab in complex with a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5UKR
Type
protein
Length
638 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Ligands
NAG

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
H—protein221——
L—protein210——
G—protein207——

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains G, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5UKR · Structure of unliganded anti-gp120 CD4bs antibody DH522.2 Fab in complex with a gp120 core · the same entry in another collection · chain H against H, TM-score 1.00

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