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Sbni from staphylococcus pseudintermedius

Analyse Sbni from staphylococcus pseudintermedius in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5UJD
Type: protein
Length: 508 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Siderophore biosynthesis protein sbni
UniProt: A0A166Q2C7
Pockets: 3 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Siderophore biosynthesis protein sbni	protein	254	31% helix, 29% strand	A0A166Q2C7

Ligands and binding sites

FMT · Formic acid · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.67	0.78	55	FMT
2	468	0.65	0.78	48	FMT
3	78	0.39	0.78	19	empty

Interfaces

1 interface between chains.

A–B · 1756 Å² buried · 29 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5UJD · SbnI from Staphylococcus pseudintermedius · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A166Q2C7
Elsewhere: RCSB PDB 5UJD · PDBe 5UJD · UniProt A0A166Q2C7

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