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The crystal structure of a laci-type transcription regulator from bifidobacterium animalis subsp. lactis dsm 10140
Analyse The crystal structure of a laci-type transcription regulator from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UFH
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laci-type transcriptional regulator
- UniProt
- B8DV56
- Ligands
- NO3
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Laci-type transcriptional regulator | protein | 280 | 41% helix, 18% strand | B8DV56 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 300 | 0.74 | 0.86 | 32 | GOL, NO3 |
| 2 | 57 | 0.29 | 0.75 | 17 | NO3 |
Modifications
Observed in the structure: 13 modified (engineered, oxidation).
Compared structures
- 5UFH · The crystal structure of a LacI-type transcription regulator from Bifidobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8DV56
- Elsewhere: RCSB PDB 5UFH · PDBe 5UFH · UniProt B8DV56
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