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Crystal structure of the rctb domains 2-3, rctb-155-483
Analyse Crystal structure of the rctb domains 2-3, rctb-155-483 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5UBF
- Type
- protein
- Length
- 554 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rctb replication initiator protein
- UniProt
- A0A085QGR2
- Pockets
- 8 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rctb replication initiator protein | protein | 277 | 34% helix, 30% strand | A0A085QGR2 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 635 | 0.67 | 0.76 | 66 | empty |
| 2 | 302 | 0.61 | 0.79 | 38 | empty |
| 3 | 146 | 0.59 | 0.84 | 29 | empty |
| 4 | 121 | 0.55 | 0.83 | 16 | empty |
| 5 | 156 | 0.52 | 0.79 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 2176 Ų buried · 42 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 5UBF · Crystal structure of the RctB domains 2-3, RctB-155-483 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A085QGR2
- Elsewhere: RCSB PDB 5UBF · PDBe 5UBF · UniProt A0A085QGR2
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