Research workbench
Crystal structure of citrus MAF1 in space group P 31 2 1
Analyse Crystal structure of citrus MAF1 in space group P 31 2 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5U4Z
- Type
- protein
- Length
- 358 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Repressor of RNA polymerase III transcription
- UniProt
- G9I821
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Repressor of RNA polymerase III transcription | protein | 181 | 46% helix, 24% strand | G9I821 |
| B | Repressor of RNA polymerase III transcription | protein | 177 | 47% helix, 23% strand | G9I821 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 172 | 0.52 | 0.79 | 24 | empty |
| 2 | 90 | 0.48 | 0.82 | 19 | SO4 |
| 3 | 91 | 0.37 | 0.76 | 17 | SO4 |
| 4 | 55 | 0.33 | 0.78 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 679 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5U4Z · Crystal structure of citrus MAF1 in space group P 31 2 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G9I821
- Elsewhere: RCSB PDB 5U4Z · PDBe 5U4Z · UniProt G9I821
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.