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1.95 ångström resolution crystal structure of penicillin binding protein 2X from streptococcus thermophilus

Analyse 1.95 ångström resolution crystal structure of penicillin binding protein 2X… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5U47
Type: protein
Length: 684 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Penicillin binding protein 2X
UniProt: Q5M2U8
Ligands: CL
Pockets: 6 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Penicillin binding protein 2X	protein	684	29% helix, 26% strand	Q5M2U8

Ligands and binding sites

CL · Chloride ion · ion · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	379	0.70	0.82	45	CL
2	375	0.60	0.77	42	empty
3	219	0.53	0.77	32	empty
4	76	0.46	0.82	22	empty
5	81	0.43	0.80	17	empty

Compared structures

5U47 · 1.95 Angstrom Resolution Crystal Structure of Penicillin Binding Protein 2X from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5M2U8
Elsewhere: RCSB PDB 5U47 · PDBe 5U47 · UniProt Q5M2U8

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