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Structure of a dicationic monoimidazole lexitropsin bound to DNA (orientation 2)

Analyse Structure of a dicationic monoimidazole lexitropsin bound to DNA (orientation 2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1LEY
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3')
Ligands: ILT
Pockets: 1 · best druggability 0.23

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)- 3')	dna	12	—	—

Ligands and binding sites

ILT · Monoimidazole lexitropsin · ligand · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.23	0.72	15	ILT

Interfaces

1 interface between chains.

A–B · 569 Å² buried · 59 hydrogen bonds · nucleic-nucleic

Compared structures

1LEY · Structure of a dicationic monoimidazole lexitropsin bound to DNA (orientation 2) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1LEY · PDBe 1LEY

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