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Frutapin complexed with alpha-D-glucose

Analyse Frutapin complexed with alpha-D-glucose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5TQZ
Type: protein
Length: 600 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Frutapin
Ligands: GLC
Pockets: 3 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 66% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Frutapin	protein	150	0% helix, 66% strand	—

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	453	0.82	0.89	62	empty
2	96	0.37	0.75	16	empty
3	89	0.32	0.73	18	empty

Interfaces

6 interfaces between chains.

C–D · 952 Å² buried · 20 hydrogen bonds · protein-protein
A–B · 939 Å² buried · 18 hydrogen bonds · protein-protein
A–C · 758 Å² buried · 12 hydrogen bonds · protein-protein
B–D · 717 Å² buried · 13 hydrogen bonds · protein-protein
B–C · 55 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5TQZ · Frutapin complexed with alpha-D-glucose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5TQZ · PDBe 5TQZ

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