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Crystal structure of a lipomyces starkeyi levoglucosan kinase G359R mutant

Analyse Crystal structure of a lipomyces starkeyi levoglucosan kinase G359R mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5TKR
Type: protein
Length: 432 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levoglucosan kinase
EC: 2.7.-.-
UniProt: B3VI55
Ligands: ADP, MG, K, SO4
Pockets: 5 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Levoglucosan kinase (EC 2.7.-.-)	protein	432	40% helix, 22% strand	B3VI55

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
K · Potassium ion · metal · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	316	0.78	0.89	52	ADP, MG, SO4, K
2	55	0.72	0.99	23	empty
3	99	0.38	0.76	17	empty
4	75	0.38	0.78	16	empty
5	62	0.37	0.79	13	K

Compared structures

5TKR · Crystal structure of a Lipomyces starkeyi levoglucosan kinase G359R mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3VI55
Elsewhere: RCSB PDB 5TKR · PDBe 5TKR · UniProt B3VI55

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