Structure of 4-hydroxy-tetrahydrodipicolinate reductase from mycobacterium tuberculosis with 2,6 pyridine dicarboxylic acid and NADH

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).

Ligands and binding sites

• PDC · Pyridine-2,6-dicarboxylic acid · ligand · chains A
• NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · chains A
• BEZ · Benzoic acid · ligand · chains A
• NA · Sodium ion · metal · chains A
• SO4 · Sulfate ion · ion · chains A
• CL · Chloride ion · ion · chains A
• EDO · 1,2-ethanediol · additive · 6 copies · chains A
• IMD · Imidazole · additive · chains A
• PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Compared structures

• 5TJY · Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Mycobacterium tuberculosis… · the same entry in another collection · chain A against A, TM-score 1.00
• A5U6C6 · AlphaFold monomer V2.0 prediction for 4-hydroxy- tetrahydrodipicolinate reductase (A5U6C6) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt A5U6C6
• Elsewhere: RCSB PDB 5TJY · PDBe 5TJY · UniProt A5U6C6