Research workbench
Crystal structure of the dimethylsulfoniopropionate (dmsp) lyase dddk complexed with iron and zinc
Analyse Crystal structure of the dimethylsulfoniopropionate (dmsp) lyase dddk complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5TG0
- Type
- protein
- Length
- 137 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dimethylsulfoniopropionate lyase dddk
- UniProt
- Q4FNM4
- Ligands
- FE, ZN
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dimethylsulfoniopropionate lyase dddk | protein | 137 | 7% helix, 43% strand | Q4FNM4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.63 | 0.86 | 19 | empty |
Compared structures
- 5TG0 · Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with iron… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4FNM4
- Elsewhere: RCSB PDB 5TG0 · PDBe 5TG0 · UniProt Q4FNM4
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