Research workbench
Crystal structure of the tir domain from the arabidopsis thaliana nlr protein SNC1
Analyse Crystal structure of the tir domain from the arabidopsis thaliana nlr protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5TEC
- Type
- protein
- Length
- 302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein suppressor of NPR1-1, constitutive 1
- UniProt
- O23530
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein suppressor of NPR1-1, constitutive 1 | protein | 154 | 55% helix, 15% strand | O23530 |
| B | Protein suppressor of NPR1-1, constitutive 1 | protein | 148 | 58% helix, 14% strand | O23530 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.49 | 0.86 | 14 | empty |
| 2 | 89 | 0.31 | 0.73 | 21 | empty |
| 3 | 69 | 0.30 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 526 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 5TEC · Crystal structure of the TIR domain from the Arabidopsis thaliana NLR protein SNC1 · the same entry in another collection · chain A against A, TM-score 1.00
- O23530 · AlphaFold monomer V2.0 prediction for protein suppressor of NPR1-1, constitutive 1… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O23530
- Elsewhere: RCSB PDB 5TEC · PDBe 5TEC · UniProt O23530
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