Research workbench
RNA decamer duplex with four 2'-5'-linkages
Analyse RNA decamer duplex with four 2'-5'-linkages in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5TDJ
- Type
- RNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')
- Ligands
- SR
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | rna | 10 | — | — |
Ligands and binding sites
- SR · Strontium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 13 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 5TDJ · RNA decamer duplex with four 2'-5'-linkages · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5TDJ · PDBe 5TDJ
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