Research workbench
Crystal structure of L-threonine-O-3-phosphate decarboxylase from S. enterica in its apo state
Analyse Crystal structure of L-threonine-O-3-phosphate decarboxylase from S. enterica… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LC5
- Type
- protein
- Length
- 355 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-threonine-O-3-phosphate decarboxylase
- UniProt
- P97084
- Ligands
- PO4
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-threonine-O-3-phosphate decarboxylase | protein | 355 | 42% helix, 16% strand | P97084 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.60 | 0.81 | 34 | PO4 |
| 2 | 103 | 0.43 | 0.78 | 17 | empty |
| 3 | 57 | 0.40 | 0.82 | 19 | empty |
| 4 | 78 | 0.38 | 0.77 | 15 | empty |
| 5 | 86 | 0.37 | 0.76 | 16 | empty |
Compared structures
- 1LC5 · Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica in its apo… · the same entry in another collection · chain A against A, TM-score 1.00
- P97084 · AlphaFold monomer V2.0 prediction for threonine-phosphate decarboxylase (P97084) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P97084
- Elsewhere: RCSB PDB 1LC5 · PDBe 1LC5 · UniProt P97084
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