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Solution structure of calcium free, myristoylated visinin-like protein 3

Analyse Solution structure of calcium free, myristoylated visinin-like protein 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5T7C
Type: protein
Length: 185 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hippocalcin-like protein 1
UniProt: P37235
Ligands: MYR
Pockets: 4 · best druggability 0.68

Structure

solution nmr · 1 distinct chain · 51% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hippocalcin-like protein 1	protein	185	51% helix, 1% strand	P37235

Ligands and binding sites

MYR · Myristic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	311	0.68	0.82	37	empty
2	509	0.64	0.76	57	MYR
3	68	0.41	0.80	21	empty
4	97	0.35	0.74	19	empty

Modifications

Observed in the structure: 1 lipid (myristoylation).

Compared structures

5T7C · Solution structure of calcium free, myristoylated visinin-like protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
P37235 · AlphaFold monomer V2.0 prediction for hippocalcin-like protein 1 (P37235) · a predicted model of the same protein · chain A against A, TM-score 0.43

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P37235
Elsewhere: RCSB PDB 5T7C · PDBe 5T7C · UniProt P37235

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