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Initial topology of the globular isomer of pnid

Analyse Initial topology of the globular isomer of pnid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5T6V
Type
protein
Length
12 residues
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Chi-conotoxin-like pnmrcl-013
UniProt
Q9BPE9
Ligands
NH2

Structure

solution nmr · 1 distinct chain · 0% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AChi-conotoxin-like pnmrcl-013protein120% helix, 0% strandQ9BPE9

Ligands and binding sites

  • NH2 · Amino group · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • Q9BPE9 · AlphaFold monomer V2.0 prediction for chi-conotoxin-like pnmrcl-013 (Q9BPE9) · a predicted model of the same protein · chain A against A, TM-score 0.26

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