Research workbench
Crystal structure of the twister sister (ts) ribozyme at 2.0 ångström
Analyse Crystal structure of the twister sister (ts) ribozyme at 2.0 ångström in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5T5A
- Type
- RNA
- Length
- 62 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA/RNA (71-mer)
- Ligands
- MG
- Pockets
- 5 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA/RNA (71-mer) | rna | 62 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.44 | 0.76 | 16 | MG |
| 2 | 123 | 0.38 | 0.75 | 15 | MG |
| 3 | 53 | 0.36 | 0.80 | 12 | MG |
| 4 | 66 | 0.27 | 0.74 | 13 | empty |
| 5 | 64 | 0.27 | 0.74 | 13 | MG |
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 5T5A · Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5T5A · PDBe 5T5A
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