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Structure of the mind complex shows a regulatory focus of yeast kinetochore assembly

Analyse Structure of the mind complex shows a regulatory focus of yeast kinetochore… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5T51
Type: protein
Length: 186 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: KLLA0F02343P; KLLA0E05809P
UniProt: Q6CLK3, Q6CPD1
Ligands: SO4
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 2 distinct chains · 81% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	KLLA0F02343P	protein	96	76% helix, 4% strand	Q6CLK3
B	KLLA0E05809P	protein	90	86% helix, 0% strand	Q6CPD1

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.32	0.77	12	empty

Interfaces

1 interface between chains.

A–B · 2107 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

5T51 · Structure of the MIND Complex Shows a Regulatory Focus of Yeast Kinetochore Assembly · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6CLK3
Every structure of UniProt Q6CPD1
Elsewhere: RCSB PDB 5T51 · PDBe 5T51 · UniProt Q6CLK3 · UniProt Q6CPD1

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