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Crystal structure of uncharacterised protein LPG1670

Analyse Crystal structure of uncharacterised protein LPG1670 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5T2X
Type: protein
Length: 771 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein LPG1670
UniProt: Q5ZUX2
Pockets: 7 · best druggability 0.52

Structure

x-ray diffraction · 3 distinct chains · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein LPG1670	protein	257	76% helix, 0% strand	Q5ZUX2
B	Uncharacterized protein LPG1670	protein	256	77% helix, 0% strand	Q5ZUX2
C	Uncharacterized protein LPG1670	protein	258	77% helix, 0% strand	Q5ZUX2

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	148	0.52	0.79	26	empty
2	167	0.50	0.78	29	empty
3	179	0.46	0.75	31	empty
4	135	0.45	0.77	22	empty
5	86	0.39	0.77	18	empty

Interfaces

2 interfaces between chains.

B–C · 866 Å² buried · 5 hydrogen bonds · protein-protein
A–B · 855 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

5T2X · Crystal structure of Uncharacterised protein lpg1670 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZUX2
Elsewhere: RCSB PDB 5T2X · PDBe 5T2X · UniProt Q5ZUX2

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