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Pelc dodecamer from paraburkholderia phytofirmans, space group P6

Analyse Pelc dodecamer from paraburkholderia phytofirmans, space group P6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5T10
Type: protein
Length: 548 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: B2T2U6
Pockets: 7 · best druggability 0.54

Structure

x-ray diffraction · 3 distinct chains · 26% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	132	27% helix, 33% strand	B2T2U6
B	Uncharacterized protein	protein	140	26% helix, 33% strand	B2T2U6
C, D	Uncharacterized protein	protein	138	25% helix, 36% strand	B2T2U6

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	289	0.54	0.75	31	empty
2	143	0.53	0.80	33	empty
3	87	0.51	0.84	19	empty
4	202	0.47	0.75	27	empty
5	52	0.38	0.81	17	empty

Interfaces

3 interfaces between chains.

C–D · 979 Å² buried · 13 hydrogen bonds · protein-protein
A–B · 923 Å² buried · 14 hydrogen bonds · protein-protein
A–D · 57 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5T10 · PelC dodecamer from Paraburkholderia phytofirmans, space group P6 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2T2U6
Elsewhere: RCSB PDB 5T10 · PDBe 5T10 · UniProt B2T2U6

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