Research workbench
Crystal structure of the MYC3 N-terminal domain [44-242] in complex with JAZ10 jas domain [166-192] from arabidopsis
Analyse Crystal structure of the MYC3 N-terminal domain [44-242] in complex with JAZ10… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5T0Q
- Type
- protein
- Length
- 188 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription factor MYC3; Protein tify 9
- UniProt
- Q9FIP9, Q93ZM9
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription factor MYC3 | protein | 171 | 40% helix, 26% strand | Q9FIP9 |
| B | Protein tify 9 | protein | 17 | 82% helix, 0% strand | Q93ZM9 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.33 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 689 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5T0Q · Crystal structure of the Myc3 N-terminal domain [44-242] in complex with JAZ10 Jas domain… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FIP9 · AlphaFold monomer V2.0 prediction for transcription factor MYC3 (Q9FIP9) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q93ZM9 · AlphaFold monomer V2.0 prediction for protein tify 9 (Q93ZM9) · a predicted model of the same protein · chain B against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FIP9
- Every structure of UniProt Q93ZM9
- Elsewhere: RCSB PDB 5T0Q · PDBe 5T0Q · UniProt Q9FIP9 · UniProt Q93ZM9
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