Research workbench
Truncated hemolysin a Q125A/Y134A from P. mirabilis at 1.8 ångströms resolution crystallized in a high salt condition
Analyse Truncated hemolysin a Q125A/Y134A from P. mirabilis at 1.8 ångströms resolution… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5SZ8
- Type
- protein
- Length
- 408 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemolysin
- UniProt
- P16466
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 1% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemolysin | protein | 205 | 1% helix, 56% strand | P16466 |
| B | Hemolysin | protein | 203 | 0% helix, 56% strand | P16466 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.71 | 0.98 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 748 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 5SZ8 · Truncated hemolysin A Q125A/Y134A from P. mirabilis at 1.8 Angstroms resolution… · the same entry in another collection · chain A against A, TM-score 1.00
- P16466 · AlphaFold monomer V2.0 prediction for hemolysin (P16466) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16466
- Elsewhere: RCSB PDB 5SZ8 · PDBe 5SZ8 · UniProt P16466
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