Research workbench
Crystal structure of ATPase DELTA1-79 SPA47 E188A
Analyse Crystal structure of ATPase DELTA1-79 SPA47 E188A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5SWL
- Type
- protein
- Length
- 675 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ATP synthase SPAL/MXIB
- EC
- 3.6.3.14
- UniProt
- P0A1C1
- Ligands
- SO4
- Pockets
- 9 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ATP synthase SPAL/MXIB (EC 3.6.3.14) | protein | 336 | 46% helix, 21% strand | P0A1C1 |
| B | Probable ATP synthase SPAL/MXIB (EC 3.6.3.14) | protein | 339 | 44% helix, 20% strand | P0A1C1 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 401 | 0.61 | 0.77 | 59 | empty |
| 2 | 347 | 0.60 | 0.77 | 26 | empty |
| 3 | 128 | 0.58 | 0.84 | 26 | SO4 |
| 4 | 98 | 0.53 | 0.84 | 20 | empty |
| 5 | 89 | 0.51 | 0.83 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 432 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A1C1
- Elsewhere: RCSB PDB 5SWL · PDBe 5SWL · UniProt P0A1C1
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