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Non structural protein encoded by gene segment 8 of rotavirus (NSP2), an NTPase, ssrna binding and nucleic acid helix-destabilizing protein
Analyse Non structural protein encoded by gene segment 8 of rotavirus (NSP2), an… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1L9V
- Type
- protein
- Length
- 313 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rotavirus-NSP2
- UniProt
- Q03243
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rotavirus-NSP2 | protein | 313 | 42% helix, 15% strand | Q03243 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 651 | 0.70 | 0.78 | 49 | empty |
| 2 | 189 | 0.57 | 0.80 | 25 | empty |
Compared structures
- 1L9V · Non Structural protein encoded by gene segment 8 of rotavirus (NSP2), an NTPase, ssRNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03243
- Elsewhere: RCSB PDB 1L9V · PDBe 1L9V · UniProt Q03243
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