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Crystal structure of kemp eliminase HG3.17 with bound transition state analog, 277K

Analyse Crystal structure of kemp eliminase HG3.17 with bound transition state analog… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5RGE
Type: protein
Length: 300 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kemp eliminase HG3
EC: 3.2.1.8
UniProt: P23360
Ligands: 6NT
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kemp eliminase HG3 (EC 3.2.1.8)	protein	300	44% helix, 20% strand	P23360

Ligands and binding sites

6NT · 6-nitrobenzotriazole · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	216	0.63	0.82	37	6NT

Compared structures

5RGE · Crystal Structure of Kemp Eliminase HG3.17 with bound transition state analog, 277K · the same entry in another collection · chain A against A, TM-score 1.00
P23360 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase (P23360) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P23360
Elsewhere: RCSB PDB 5RGE · PDBe 5RGE · UniProt P23360

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