Research workbench

Group deposition of library data - crystal structure of ecdsba after initial refinement with no ligand modelled (structure F1_1)

Analyse Group deposition of library data - crystal structure of ecdsba after initial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5QMF
Type: protein
Length: 376 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: THIOL:DISULFIDE interchange protein
UniProt: A0A073FPA6
Pockets: 4 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	THIOL:DISULFIDE interchange protein	protein	188	54% helix, 11% strand	A0A073FPA6

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	172	0.59	0.82	24	empty
2	235	0.52	0.76	35	empty
3	143	0.41	0.74	14	empty
4	94	0.34	0.74	13	empty

Interfaces

1 interface between chains.

A–B · 817 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5QMF · Group deposition of library data - Crystal Structure of EcDsbA after initial refinement… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A073FPA6
Elsewhere: RCSB PDB 5QMF · PDBe 5QMF · UniProt A0A073FPA6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.