Research workbench
Solution NMR structure of the [AP]DG adduct opposite da in a DNA duplex, NMR, 9 structures
Analyse Solution NMR structure of the [AP]DG adduct opposite da in a DNA duplex, NMR, 9… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1AXU
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA duplex D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG)
- Ligands
- AP
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA duplex D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) | dna | 11 | — | — |
| B | DNA duplex D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) | dna | 11 | — | — |
Ligands and binding sites
- AP · N-1-aminopyrene · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 522 Ų buried · 54 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1AXU · Solution NMR structure of the [AP]DG adduct opposite da in a DNA duplex, NMR, 9 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1AXU · PDBe 1AXU
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