Research workbench
Structure of the lict bacterial antiterminator protein in complex with its RNA target
Analyse Structure of the lict bacterial antiterminator protein in complex with its RNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1L1C
- Type
- protein + RNA
- Length
- 139 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lict mRNA antiterminator hairpin; Transcription antiterminator lict
- UniProt
- P39805
- Pockets
- 2 · best druggability 0.32
Structure
solution nmr · 2 distinct chains · 5% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Lict mRNA antiterminator hairpin | rna | 29 | — | — |
| A, B | Transcription antiterminator lict | protein | 55 | 5% helix, 40% strand | P39805 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.32 | 0.75 | 15 | empty |
| 2 | 62 | 0.32 | 0.75 | 15 | empty |
Interfaces
3 interfaces between chains.
- A–B · 765 Ų buried · 15 hydrogen bonds · protein-protein
- C–B · 615 Ų buried · 19 hydrogen bonds · protein-nucleic
- C–A · 606 Ų buried · 19 hydrogen bonds · protein-nucleic
Compared structures
- 1L1C · Structure of the LicT Bacterial Antiterminator Protein in Complex with its RNA Target · the same entry in another collection · chain C against C, TM-score 1.00
- P39805 · AlphaFold monomer V2.0 prediction for transcription antiterminator lict (P39805) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39805
- Elsewhere: RCSB PDB 1L1C · PDBe 1L1C · UniProt P39805
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