Research workbench
Riboflavin synthase from S.POMBE bound to carboxyethyllumazine
Analyse Riboflavin synthase from S.POMBE bound to carboxyethyllumazine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KZL
- Type
- protein
- Length
- 202 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Riboflavin synthase
- EC
- 2.5.1.9
- UniProt
- Q9Y7P0
- Ligands
- CRM, HG
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Riboflavin synthase (EC 2.5.1.9) | protein | 202 | 19% helix, 43% strand | Q9Y7P0 |
Ligands and binding sites
- CRM · 3-[8-((2S,3S,4R)-2,3,4,5-tetrahydroxypentyl)-2,4,7-trioxo-1,3,8-trihydropteridin-6-yl]propanoic acid · ligand · 2 copies · chains A
- HG · Mercury (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.35 | 0.77 | 12 | empty |
| 2 | 51 | 0.28 | 0.75 | 14 | CRM |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y7P0
- Elsewhere: RCSB PDB 1KZL · PDBe 1KZL · UniProt Q9Y7P0
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